Conformational analysis of cyclic phosphates derived from 5-C′ substituted 1,2-O-isopropylidene-α-d-xylofuranose derivatives

Twelve 2-phenoxy-2-oxo-1,3,2-dioxaphosphorinanes fused with a 1,2-O-isopropylidene-α-d-xylofuranose moiety in cis orientation and substituted at the C′5 position were prepared in two steps from commercially available diacetone-α-d-glucose. Their conformations, and configurations were determined by ¹H and ³¹P NMR and X-ray crystallographic techniques. Both, chair-twisted-chair and chair-boat equilibria were observed in solution. We observed that the strong anisotropic shielding effect of the benzene ring in the phenoxy group generates an upfield shift of the H¹ hydrogen atom, when the cyclic phosphates adopt a boat conformation. This is due to a relative cis-orientation of the P-phenoxy group and the H¹ proton of the 1,2-O-isopropylidene-α-d-xylofuranose moiety. Therefore, the configuration of the phosphorus center (S_P or R_P) can be determined by ¹H NMR spectroscopy. Interestingly, the crystal structure of one of the cyclic phosphates exhibits two independent molecules in the asymmetric unit, one with a chair and the other one with a boat conformation.     

Flow-injection determination of mixtures of amines immobilized in the flow cell of a photometric diode-array detector

A method for the determination of 2,4-dinitrophenylhydrazine and 2- and 4-nitrophenylhydrazine in mixtures based on their different spectral features is proposed. The sample containing the amines is injected into an FIA manifold and passed through the flow cell of a diode-array spectrophotometer where a support (C₁₈ bonded silica) retains the analytes. The amines are concentrated in situ, thereby achieving a determination limit of 5 × 10^?7 M. The carrier (phosphate buffer-methanol) rapidly elutes the retained compounds, so a sampling frequency of 40 h^?1 could be obtained. The resolution of mixtures of these amines can be carried out with acceptable low errors.     

A straightforward synthesis of 5'-peptide oligonucleotide conjugates using N(alpha)-Fmoc-protected amino acids

[reaction: see text] 5'-Peptide oligonucleotide conjugates were prepared stepwise on a single support using N(alpha)-Fmoc-protected amino acids and unprotected phosphate groups. The method uses commercially available reagents and is successful with most natural amino acids. The simplicity of the method may encourage researchers to prepare new oligonucleotide-peptide conjugates with novel properties.     

Excited-state singlet manifold and oscillatory features of a nonatetraeniminium retinal chromophore model

In this paper we use ab initio multireference M?ller-Plesset second-order perturbation theory computations to map the first five singlet states (S(0), S(1), S(2), S(3), and S(4)) along the initial part of the photoisomerization coordinate for the isolated rhodopsin chromophore model 4-cis-gamma-methylnona-2,4,6,8-tetraeniminium cation. We show that this information not only provides an explanation for the spectral features associated to the chromophore in solution but also, subject to a tentative hypothesis on the effect of the protein cavity, may be employed to explain/assign the ultrafast near-IR excited-state absorption, stimulated emission, and transient excited-state absorption bands observed in rhodopsin proteins (e.g. rhodopsin and bacteriorhodopsin). We also show that the results of vibrational frequency computations reveal a general structure for the first (S(1)) excited-state energy surface of PSBs that is consistent with the existence of the coherent oscillatory motions observed both in solution and in bacteriorhodopsin.     

New SIMS Procedures for the Characterization of a Complex Silicate Matrix, Na3(REE,Th,Ca,U)Si6O15·2.5H2O (Sazhinite), and Comparison with EMPA and SREF Results

Analytical methods based on secondary ion mass spectrometry were developed for the characterisation of a complex layered silicate REE-mineral, named sazhinite, for which a number of issues are still open regarding its chemistry and structure. Such procedures involved the analysis and quantification of light, volatile, alkaline, medium-Z, rare earth and actinide elements. The accuracy of the SIMS data is within the assigned precision of the concentration values assumed as reference in the calibration standards employed. REE and actinide data yield a good agreement in terms of calculated site scattering at the M site: 58.42 electrons per formula unit (epfu) vs. 60.39epfu obtained by Single Crystal Structure-Refinement (SREF). Accuracy is estimated on the order of 5% rel. for H, Li, Be and B, and 10% rel. for F. Na analysis was crucial to solve the open questions about the structure, and excellent agreement was obtained by comparing data from SIMS (REE, Y, actinides, Na)+EMPA (SiO₂, CaO, SO₃ and K₂O) with information derived from SREF: site scattering of the M site+Na sites=92.56epfu calculated from chemical data, against 91.95epfu from SREF. Such procedures can be easily extended to the analysis of variously complex, silicate REE-minerals.     

Conformations of highly hindered aryl ethers. XXI—fragementation paths involving intramolecular π-complexes and cyclizations in the mass spectra of 2,4-dinitrophenyl 2′-alkylphenyl ethers

The mass spectrometric study of 2,4-dinitrophenyl 2′-R-phenyl ethers (R ? H, Me, Et, i-Pr, tert-Bu) showed that (1) fragmentation proceeds differently from unsubstituted and 4-nitro-substituted diphenyl ethers; (2) important fragmentation routes involve interannular migrations and cyclizations; (3) these occur between two groups ortho to the ether linkage while the ethers are in unfavorable endo, endo twist conformations; (4) the observed interannular interactions can be ustified by the existence in these compounds of an intramolecular π-complex which stabilizes the sterically unfavorable conformation and explains the observed fragmentations.     

Vibrational relaxations of NO by atomic oxygen

A laser-induced fluorescence method has been used to study the vibrational relaxation of NO by atomic oxygen, i.e. NO(v=1) + O — NO(v=0) + O(2). The NO was excited indirectly by vibrational-vibrational energy transfer from HCI(v=1), these molecules having been prepared using the output from a pulsed HCl chemical laser. The experiments yield: k₂=(6.5 ± 0.7) × 10^?11 cm³ molecule^?1 s^?1 at (296 ± 3) K.     

A detailed study of the vapochromic Behavior of [Tl[Au(C6Cl5)2]]n

The linear-chain polymer [Tl[Au(C(6)Cl(5))(2)]](n), 1, reacts in the solid state and in solution with different volatile organic compounds such as tetrahydrofuran, acetone, tetrahydrothiophene, 2-fluoropyridine, acetonitrile, acetylacetone, and pyridine. Solid-state exposure of 1 to vapors of the above VOCs produces a selective and reversible change in its color that is perceptible to the human eye and even deeper under UV irradiation, allowing 1 to function as a sensor for these VOCs. Heating the samples exposed to the VOCs for a few minutes at 100 degrees C regenerates the original material without degradation, even after several exposure/heating cycles. The reversibility is further confirmed by X-ray powder diffraction measurements of complex 1 before and after exposure to vapors and again after heating the samples. The products obtained by reactions of complex 1 with the above VOCs as ligands in solution contain extended linear chains of alternating gold and thallium centers with two molecules of the organic ligands attached to each thallium atom. The stoichiometry of these materials has been confirmed by single-crystal X-ray diffraction as [Tl(THF)(2)[Au(C(6)Cl(5))(2)]](n), 3, and [Tl(acacH)(2)[Au(C(6)Cl(5))(2)]](n), 5. Comparison of FT-IR, UV-vis, and luminescence spectra at room temperature and at 77 K of the solid samples of complexes 2-9 with the spectra of complex 1 after its exposure to VOCs suggests interaction occurs between the organic VOCs and thallium in each case. Thermogravimetric analyses data indicate that all the thallium centers in these derivatives of complex 1 are neither fully nor equally coordinatively saturated. The materials formed appear to be intermediates between complex 1 with no VOCs attached and complexes 3-9 which contain two organic ligands coordinated to each thallium. A crystal structure analyses of one of these intermediates, [Tl(THF)(0.5)[Au(C(6)Cl(5))(2)]](n), 1.0.5THF, confirms this. Density functional calculations are in accord with the observed experimental results. Analysis reveals a substantial participation of the metal atoms in transitions that give rise to the observed emissions. Crystallographic data are as follows. For 1.0.5THF: triclinic, P1, a = 8.9296(1) A, b = 11.2457(1) A, c = 21.2465(3) A, alpha = 96.7187(7) degrees, beta = 92.5886(6) degrees, gamma = 98.5911(8) degrees, V = 2090.87(4) A(3), and Z = 2. For 3: monoclinic, P2(1)/c, a = 26.4163(6) A, b = 12.1619(2) A, c = 28.0813(6) A, alpha = 90 degrees, beta = 161.9823(6) degrees, gamma = 90 degrees, V = 2790.51(10) A(3), and Z = 4. For 5: monoclinic, P2(1)/c, a = 9.8654(2) A, b = 29.8570(5) A, c = 11.6067(2) A, alpha = 90 degrees, beta = 114.5931(6) degrees, gamma = 90 degrees, V = 3108.64(10) A(3), and Z = 4.     

Thermotropic aromatic copolyesters of catechol

Three new series of thermotropic aromatic main-chain polymers were synthesized and studied by differential scanning calorimetry and hot-stage polarized microscopy. The polymers were random copolyesters of p-hydroxybenzoic acid (from 60 to 10 mol %), catechol (from 20 to 45 mol %), and one of the following dicarboxylic diacids: terephthalic acid (series 1 ), 2,6-naphtalenedicarboxylic acid (series 2 ), and 1,2-bis-p-carboxyphenoxy ethane (series 3 ). Copolyesters with more than 25 mol % catechol in their structures were soluble in common organic solvents such as chloroform. All the synthesized copolyesters showed hysteresis of the heat capacity at the mesophase glass transition region and nematic mesophases above their T_g's which were stable over very broad ranges of temperature. Copolyesters containing the 2,6-naphtylenedioyl group showed the most stable nematic phases due to the increased anisometry of the 2,6-naphtylenedioyl unit compared to that of the therephthaloyl or the 4-oxybenzoyl units. © 1992 John Wiley & Sons, Inc.